Variant report

Variant	rs61162054
Chromosome Location	chr8:63374719-63374720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56095987	1.00[AMR][1000 genomes]
rs58995924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157619	1.00[AMR][1000 genomes]
rs73683317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683324	1.00[AMR][1000 genomes]
rs73683354	1.00[AMR][1000 genomes]
rs73683361	1.00[AMR][1000 genomes]
rs73684984	1.00[AMR][1000 genomes]
rs73684987	1.00[AMR][1000 genomes]
rs73684990	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684991	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684992	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684993	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684994	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684995	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv982137	chr8:63277579-63399979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63372000-63374800	Weak transcription	Brain Anterior Caudate	brain
2	chr8:63372000-63375000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:63373400-63375200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:63373800-63375400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:63374000-63389600	Weak transcription	Fetal Intestine Small	intestine
6	chr8:63374200-63374800	Weak transcription	Fetal Intestine Large	intestine
7	chr8:63374400-63374800	Enhancers	Brain Germinal Matrix	brain
8	chr8:63374400-63375000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:63374600-63375000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:63374600-63375400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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