Variant report

Variant	rs61192398
Chromosome Location	chr7:104574814-104574815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104573476..104576599-chr7:104652408..104655277,3	MCF-7	breast:
2	chr7:104568830..104571108-chr7:104573802..104575373,2	K562	blood:
3	chr7:104571186..104579198-chr7:104651179..104656823,10	K562	blood:
4	chr7:104569608..104571154-chr7:104573802..104576090,2	K562	blood:
5	chr7:104572713..104579198-chr7:104651179..104657046,8	K562	blood:

Variant related genes	Relation type
ENSG00000228393	Chromatin interaction
ENSG00000005483	Chromatin interaction
ENSG00000239569	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10274325	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12668896	0.83[AMR][1000 genomes]
rs13239438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2073972	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35110258	0.94[ASN][1000 genomes]
rs35472599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60137855	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9791783	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3421532	chr7:104571416-104575714	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104567200-104575200	Enhancers	Fetal Intestine Small	intestine
2	chr7:104569800-104580600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:104569800-104584000	Weak transcription	Esophagus	oesophagus
4	chr7:104570400-104575400	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:104570600-104575400	Enhancers	Stomach Mucosa	stomach
6	chr7:104571400-104575200	Enhancers	Fetal Intestine Large	intestine
7	chr7:104572200-104577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:104572200-104580000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:104572200-104580800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:104572800-104579400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:104573400-104580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:104573600-104576800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:104573600-104579400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:104573600-104580200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:104573800-104579400	Weak transcription	Fetal Kidney	kidney
16	chr7:104573800-104583200	Weak transcription	Fetal Heart	heart
17	chr7:104574000-104575200	Enhancers	Duodenum Mucosa	Duodenum
18	chr7:104574000-104575200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr7:104574000-104579600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:104574000-104579800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:104574000-104580800	Weak transcription	Colonic Mucosa	Colon
22	chr7:104574200-104575000	Weak transcription	Small Intestine	intestine
23	chr7:104574200-104576800	Weak transcription	Spleen	Spleen
24	chr7:104574200-104579200	Weak transcription	GM12878-XiMat	blood
25	chr7:104574200-104579400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:104574400-104575000	Enhancers	Primary B cells from cord blood	blood
27	chr7:104574400-104582000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:104574600-104575200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr7:104574800-104575000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:104574800-104575200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links