Variant report

Variant	rs61195869
Chromosome Location	chr10:25705070-25705071
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12770371	1.00[ASN][1000 genomes]
rs12777013	1.00[ASN][1000 genomes]
rs12778704	1.00[ASN][1000 genomes]
rs12778817	1.00[ASN][1000 genomes]
rs34165837	1.00[ASN][1000 genomes]
rs34207877	1.00[ASN][1000 genomes]
rs34393723	1.00[ASN][1000 genomes]
rs34427293	1.00[ASN][1000 genomes]
rs34573334	1.00[ASN][1000 genomes]
rs34784889	1.00[ASN][1000 genomes]
rs34823294	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893617	1.00[ASN][1000 genomes]
rs35173442	1.00[ASN][1000 genomes]
rs35257646	1.00[ASN][1000 genomes]
rs35316012	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35361058	1.00[ASN][1000 genomes]
rs35677024	1.00[ASN][1000 genomes]
rs35677680	1.00[ASN][1000 genomes]
rs35709145	1.00[ASN][1000 genomes]
rs35850110	1.00[ASN][1000 genomes]
rs35898125	1.00[ASN][1000 genomes]
rs35989426	1.00[ASN][1000 genomes]
rs36035509	1.00[ASN][1000 genomes]
rs59342106	1.00[ASN][1000 genomes]
rs61261208	1.00[ASN][1000 genomes]
rs61401625	0.82[ASN][1000 genomes]
rs71495430	1.00[ASN][1000 genomes]
rs71495431	1.00[ASN][1000 genomes]
rs71495432	1.00[ASN][1000 genomes]
rs71495433	1.00[ASN][1000 genomes]
rs71495434	1.00[ASN][1000 genomes]
rs71495435	1.00[ASN][1000 genomes]
rs71495436	1.00[ASN][1000 genomes]
rs71495437	1.00[ASN][1000 genomes]
rs71495438	0.82[ASN][1000 genomes]
rs71495439	0.82[ASN][1000 genomes]
rs71495452	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74123869	1.00[ASN][1000 genomes]
rs74123870	1.00[ASN][1000 genomes]
rs74123871	1.00[ASN][1000 genomes]
rs74123872	1.00[ASN][1000 genomes]
rs74123875	1.00[ASN][1000 genomes]
rs74124007	0.92[ASN][1000 genomes]
rs74126023	1.00[ASN][1000 genomes]
rs74126025	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25701400-25705200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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