Variant report

Variant	rs61215181
Chromosome Location	chr1:93956404-93956405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93956366..93958435-chr1:93961316..93964095,2	K562	blood:
2	chr1:93913552..93915677-chr1:93955998..93958908,2	MCF-7	breast:
3	chr1:93955188..93957136-chr1:93959223..93960839,2	K562	blood:

Variant related genes	Relation type
ENSG00000137942	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10157785	1.00[EUR][1000 genomes]
rs11799859	1.00[EUR][1000 genomes]
rs11802421	1.00[EUR][1000 genomes]
rs11805046	1.00[EUR][1000 genomes]
rs11808266	1.00[EUR][1000 genomes]
rs13373766	1.00[EUR][1000 genomes]
rs17109954	1.00[EUR][1000 genomes]
rs17110016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17110023	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17131715	1.00[EUR][1000 genomes]
rs17131717	1.00[EUR][1000 genomes]
rs35555794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55670441	1.00[EUR][1000 genomes]
rs55742446	1.00[EUR][1000 genomes]
rs55959166	1.00[EUR][1000 genomes]
rs57291093	1.00[EUR][1000 genomes]
rs57353954	1.00[EUR][1000 genomes]
rs58343196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58351576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58505360	1.00[EUR][1000 genomes]
rs59045869	1.00[EUR][1000 genomes]
rs59250599	1.00[EUR][1000 genomes]
rs60032869	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60046384	1.00[EUR][1000 genomes]
rs60517691	1.00[EUR][1000 genomes]
rs61671588	1.00[EUR][1000 genomes]
rs6541360	1.00[EUR][1000 genomes]
rs6541378	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664053	1.00[EUR][1000 genomes]
rs6678465	1.00[EUR][1000 genomes]
rs6682265	1.00[EUR][1000 genomes]
rs6687167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703963	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72961310	1.00[EUR][1000 genomes]
rs74101603	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101663	1.00[EUR][1000 genomes]
rs74101667	1.00[EUR][1000 genomes]
rs74101669	1.00[EUR][1000 genomes]
rs74101670	1.00[EUR][1000 genomes]
rs74104033	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7518171	1.00[EUR][1000 genomes]
rs7525388	1.00[EUR][1000 genomes]
rs7530923	1.00[EUR][1000 genomes]
rs7545358	1.00[EUR][1000 genomes]
rs754899	1.00[EUR][1000 genomes]
rs9662414	1.00[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:93950200-93959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:93950400-93974800	Weak transcription	HepG2	liver
10	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:93951600-93960000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:93952400-93956600	Weak transcription	Small Intestine	intestine
13	chr1:93952400-93958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:93952800-93959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:93954200-93956800	Weak transcription	Left Ventricle	heart
17	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:93954800-93959200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:93955000-93956800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:93955800-93960000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:93956000-93956600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr1:93956000-93962000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:93956200-93974000	Weak transcription	HMEC	breast
26	chr1:93956400-93957000	Weak transcription	Stomach Mucosa	stomach
27	chr1:93956400-93960600	Weak transcription	HUVEC	blood vessel
28	chr1:93956400-93963400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach

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