Variant report

Variant	rs61218213
Chromosome Location	chr1:211400933-211400934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211398841..211401598-chr1:211430818..211432562,3	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10732682	1.00[ASN][1000 genomes]
rs10746434	1.00[ASN][1000 genomes]
rs10779554	1.00[ASN][1000 genomes]
rs10779555	1.00[ASN][1000 genomes]
rs10863887	1.00[ASN][1000 genomes]
rs11119706	0.96[EUR][1000 genomes]
rs12043438	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063878	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072778	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533219	1.00[ASN][1000 genomes]
rs1983259	1.00[ASN][1000 genomes]
rs1983260	1.00[ASN][1000 genomes]
rs2358215	1.00[ASN][1000 genomes]
rs3111241	0.98[EUR][1000 genomes]
rs3111242	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111247	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111250	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111254	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111256	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3120784	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125828	0.99[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125829	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125834	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3125840	1.00[ASN][1000 genomes]
rs3125841	1.00[ASN][1000 genomes]
rs3855878	1.00[ASN][1000 genomes]
rs4347268	1.00[ASN][1000 genomes]
rs4370817	1.00[ASN][1000 genomes]
rs4396171	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4556425	1.00[ASN][1000 genomes]
rs4951517	1.00[ASN][1000 genomes]
rs4951735	1.00[ASN][1000 genomes]
rs4951737	1.00[ASN][1000 genomes]
rs4951738	1.00[ASN][1000 genomes]
rs4951739	1.00[ASN][1000 genomes]
rs4951740	1.00[ASN][1000 genomes]
rs61737773	0.93[EUR][1000 genomes]
rs61848567	1.00[ASN][1000 genomes]
rs6540675	1.00[ASN][1000 genomes]
rs6540676	1.00[ASN][1000 genomes]
rs6540678	1.00[ASN][1000 genomes]
rs6657779	1.00[ASN][1000 genomes]
rs6663627	1.00[ASN][1000 genomes]
rs6671526	1.00[ASN][1000 genomes]
rs6688682	1.00[ASN][1000 genomes]
rs6692815	1.00[ASN][1000 genomes]
rs7517135	1.00[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211397800-211405200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:211400800-211401000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:211400800-211401200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:211400800-211403400	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links