Variant report

Variant	rs612200
Chromosome Location	chr6:150691357-150691358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11969964	0.89[ASN][1000 genomes]
rs1339104	0.89[ASN][1000 genomes]
rs1339105	0.89[ASN][1000 genomes]
rs1339106	0.89[ASN][1000 genomes]
rs1339107	0.89[ASN][1000 genomes]
rs1339109	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1339110	0.86[ASN][1000 genomes]
rs2064213	0.86[ASN][1000 genomes]
rs57538858	0.89[ASN][1000 genomes]
rs602842	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61253143	0.90[ASN][1000 genomes]
rs617594	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs618514	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62432478	0.88[ASN][1000 genomes]
rs62432481	0.86[ASN][1000 genomes]
rs62432482	0.89[ASN][1000 genomes]
rs62432483	0.86[ASN][1000 genomes]
rs62432484	0.85[ASN][1000 genomes]
rs629163	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs630632	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs632337	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs632829	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs652210	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs653588	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs654101	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs654476	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs660382	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs671675	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs683255	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7749131	0.90[ASN][1000 genomes]
rs7749894	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7757136	0.92[ASN][1000 genomes]
rs7757456	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7761373	0.89[ASN][1000 genomes]
rs7772485	0.92[ASN][1000 genomes]
rs9371429	0.86[ASN][1000 genomes]
rs9371991	0.91[ASN][1000 genomes]
rs9384445	0.81[ASN][1000 genomes]
rs9384466	0.92[ASN][1000 genomes]
rs9397292	0.88[ASN][1000 genomes]
rs9397937	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9480323	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3393784	chr6:150689259-150693557	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150689200-150693200	Enhancers	Fetal Intestine Large	intestine
2	chr6:150689200-150693400	Enhancers	Fetal Intestine Small	intestine
3	chr6:150689800-150691800	Flanking Active TSS	Liver	Liver
4	chr6:150690000-150691600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr6:150690200-150691400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:150690200-150691600	Active TSS	Colonic Mucosa	Colon
7	chr6:150690800-150691400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:150691000-150691600	Active TSS	Fetal Kidney	kidney
9	chr6:150691000-150698200	Weak transcription	Stomach Mucosa	stomach
10	chr6:150691200-150691400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150691200-150691400	Active TSS	Gastric	stomach
12	chr6:150691200-150691600	Flanking Active TSS	Duodenum Mucosa	Duodenum
13	chr6:150691200-150691600	ZNF genes & repeats	Lung	lung

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