Variant report

Variant	rs61223740
Chromosome Location	chr1:172694378-172694379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172411162..172414033-chr1:172693711..172696426,2	K562	blood:
2	chr1:172419462..172421013-chr1:172693818..172696648,2	K562	blood:

Variant related genes	Relation type
ENSG00000180999	Chromatin interaction
ENSG00000135845	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11803323	0.85[AMR][1000 genomes]
rs11803350	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844922	0.85[AMR][1000 genomes]
rs16844927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844967	0.85[AMR][1000 genomes]
rs16844968	0.85[AMR][1000 genomes]
rs41421246	0.85[AMR][1000 genomes]
rs55913261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56663247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57707973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59977644	0.85[AMR][1000 genomes]
rs61383871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425040	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425042	0.85[AMR][1000 genomes]
rs6664516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038088	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038099	0.85[AMR][1000 genomes]
rs7519689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527983	1.00[AMR][1000 genomes]
rs7532033	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987261	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs989340	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172689200-172696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:172691800-172696600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:172693200-172694800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:172693200-172694800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:172693400-172694400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172693400-172712200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172693600-172694400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:172693600-172694600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:172693600-172694600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr1:172693600-172694800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr1:172693600-172694800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:172693600-172695000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:172693600-172696200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:172693800-172694400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr1:172693800-172694400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr1:172693800-172694400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr1:172693800-172694400	Enhancers	Fetal Thymus	thymus
19	chr1:172693800-172694600	Enhancers	Primary B cells from cord blood	blood
20	chr1:172693800-172694600	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:172693800-172694600	Enhancers	Primary hematopoietic stem cells	blood
22	chr1:172693800-172694600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:172693800-172694800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr1:172693800-172697400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr1:172694000-172694600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr1:172694200-172694600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:172694200-172694600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:172694200-172694600	Flanking Active TSS	GM12878-XiMat	blood

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