Variant report

Variant	rs61244658
Chromosome Location	chr2:181832591-181832592
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11885073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11885499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11890538	1.00[AMR][1000 genomes]
rs11891901	1.00[AMR][1000 genomes]
rs11896331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898536	0.95[AFR][1000 genomes]
rs11899193	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11901821	1.00[AMR][1000 genomes]
rs11902135	1.00[AMR][1000 genomes]
rs11902832	1.00[AMR][1000 genomes]
rs16867374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55742474	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55980983	1.00[AMR][1000 genomes]
rs56276437	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57670948	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57698592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59304478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59850603	1.00[AMR][1000 genomes]
rs60753078	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6704898	1.00[AMR][1000 genomes]
rs6715119	1.00[AMR][1000 genomes]
rs6716249	1.00[AMR][1000 genomes]
rs6717911	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721914	1.00[AMR][1000 genomes]
rs6740342	1.00[AMR][1000 genomes]
rs6751625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974713	1.00[AMR][1000 genomes]
rs73974714	1.00[AMR][1000 genomes]
rs73974721	1.00[AMR][1000 genomes]
rs73974754	1.00[AMR][1000 genomes]
rs73974755	1.00[AMR][1000 genomes]
rs73974756	1.00[AMR][1000 genomes]
rs73974761	1.00[AMR][1000 genomes]
rs73974765	1.00[AMR][1000 genomes]
rs73974766	1.00[AMR][1000 genomes]
rs73976805	1.00[AMR][1000 genomes]
rs73976807	1.00[AMR][1000 genomes]
rs73976817	1.00[AMR][1000 genomes]
rs73976819	1.00[AMR][1000 genomes]
rs73976820	1.00[AMR][1000 genomes]
rs73976867	1.00[AMR][1000 genomes]
rs73977146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977154	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570421	1.00[AMR][1000 genomes]
rs9967843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181832000-181832600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:181832000-181832600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:181832200-181832800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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