Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10743927	0.81[EUR][1000 genomes]
rs10845220	0.81[EUR][1000 genomes]
rs1548804	0.83[EUR][1000 genomes]
rs2159899	0.83[EUR][1000 genomes]
rs2232956	0.90[EUR][1000 genomes]
rs2418105	0.90[EUR][1000 genomes]
rs2418106	0.83[EUR][1000 genomes]
rs2900550	0.90[EUR][1000 genomes]
rs3851578	0.90[EUR][1000 genomes]
rs3906864	0.87[EUR][1000 genomes]
rs619381	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs621112	0.90[EUR][1000 genomes]
rs6488328	0.90[EUR][1000 genomes]
rs666841	0.90[EUR][1000 genomes]
rs667128	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs669503	0.90[EUR][1000 genomes]
rs684208	0.86[EUR][1000 genomes]
rs7299578	0.90[EUR][1000 genomes]
rs741092	0.83[EUR][1000 genomes]
rs763839	0.81[EUR][1000 genomes]
rs7957888	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs612808	TAS2R45	N/A	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10973600-11009600	Weak transcription	HSMM	muscle
2	chr12:10974600-10975200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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