Variant report

Variant	rs61296942
Chromosome Location	chr10:50569526-50569527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17009940	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009941	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009956	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009957	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009961	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17010002	0.86[EUR][1000 genomes]
rs1977293	0.86[EUR][1000 genomes]
rs2889781	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2889783	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4562729	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58651064	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58733378	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59096752	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59572955	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59959035	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60811583	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7900263	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50567200-50571600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:50567400-50569600	Enhancers	Left Ventricle	heart
3	chr10:50567600-50569600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:50567600-50572000	Enhancers	Pancreas	Pancrea
5	chr10:50567800-50569600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:50567800-50569600	Enhancers	Fetal Heart	heart
7	chr10:50567800-50570200	Enhancers	Right Ventricle	heart
8	chr10:50568000-50570600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:50568400-50569800	Weak transcription	GM12878-XiMat	blood
10	chr10:50568800-50573400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:50569000-50570200	Weak transcription	HepG2	liver
12	chr10:50569000-50571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:50569200-50569600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:50569200-50570000	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:50569400-50569800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:50569400-50569800	Weak transcription	Lung	lung
17	chr10:50569400-50570000	Enhancers	NHEK	skin
18	chr10:50569400-50570600	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr10:50569400-50575600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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