Variant report
| Variant | rs61305890 |
|---|---|
| Chromosome Location | chr7:126369889-126369890 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126345298..126347848-chr7:126367419..126370072,2 | K562 | blood: | |
| 2 | chr7:126363919..126365530-chr7:126368922..126370814,2 | K562 | blood: | |
| 3 | chr7:126359674..126361280-chr7:126368196..126369937,2 | K562 | blood: | |
| 4 | chr7:126368803..126371577-chr7:126373352..126375062,2 | K562 | blood: | |
| 5 | chr7:126338487..126341370-chr7:126368124..126371050,2 | K562 | blood: | |
| 6 | 7:126366539-126370331..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1592373 | 1.00[AMR][1000 genomes] |
| rs6944324 | 1.00[AMR][1000 genomes] |
| rs6948359 | 1.00[AMR][1000 genomes] |
| rs6958101 | 1.00[AMR][1000 genomes] |
| rs6974461 | 1.00[AMR][1000 genomes] |
| rs73720728 | 1.00[AMR][1000 genomes] |
| rs73720748 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73722650 | 1.00[AMR][1000 genomes] |
| rs73722655 | 1.00[AMR][1000 genomes] |
| rs7777238 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
