Variant report

Variant	rs61308398
Chromosome Location	chr13:30988397-30988398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30986809..30988402-chr13:30995309..30997032,2	MCF-7	breast:
2	chr13:30986896..30990886-chr13:30991791..30995156,4	K562	blood:

Variant related genes	Relation type
ENSG00000225039	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55923400	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30982600-30995200	Weak transcription	HSMMtube	muscle
2	chr13:30983000-30989000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:30983200-30989400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:30983200-30989400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr13:30983200-30995600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr13:30984000-30995000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:30984200-30988800	Weak transcription	Fetal Thymus	thymus
8	chr13:30984400-30989600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:30984800-30992000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:30985000-30992600	Weak transcription	NHDF-Ad	bronchial
11	chr13:30985600-30992600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:30986000-30989600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr13:30986000-30989600	Enhancers	Primary B cells from cord blood	blood
14	chr13:30986200-30991400	Enhancers	Primary B cells from peripheral blood	blood
15	chr13:30987400-30989200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr13:30987600-30988400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr13:30987600-30993400	Weak transcription	Spleen	Spleen
18	chr13:30987800-30988400	Enhancers	Primary hematopoietic stem cells	blood
19	chr13:30988000-30989000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr13:30988200-30989000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr13:30988200-30995000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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