Variant report

Variant	rs61310168
Chromosome Location	chr1:195801707-195801708
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:195689328..195691093-chr1:195801582..195803089,2	K562	blood:
2	chr1:195797258..195800617-chr1:195801133..195805279,5	K562	blood:
3	chr1:195799469..195802438-chr1:195824190..195826627,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10218627	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10494732	1.00[AMR][1000 genomes]
rs10921924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10921925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10921926	0.89[AFR][1000 genomes]
rs10921927	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10921962	1.00[AMR][1000 genomes]
rs10921963	1.00[AMR][1000 genomes]
rs10921964	1.00[AMR][1000 genomes]
rs10921965	1.00[AMR][1000 genomes]
rs10921966	1.00[AMR][1000 genomes]
rs12057268	1.00[AMR][1000 genomes]
rs12064485	1.00[AMR][1000 genomes]
rs12064729	1.00[AMR][1000 genomes]
rs12075424	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086144	1.00[AMR][1000 genomes]
rs12086305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091295	1.00[AMR][1000 genomes]
rs12091529	1.00[AMR][1000 genomes]
rs12091568	1.00[AMR][1000 genomes]
rs12094869	1.00[AMR][1000 genomes]
rs12095849	1.00[AMR][1000 genomes]
rs13374044	1.00[AMR][1000 genomes]
rs13374137	1.00[AMR][1000 genomes]
rs13375919	1.00[AMR][1000 genomes]
rs13376008	1.00[AMR][1000 genomes]
rs13376090	1.00[AMR][1000 genomes]
rs13376278	1.00[AMR][1000 genomes]
rs13376291	1.00[AMR][1000 genomes]
rs16838964	1.00[AMR][1000 genomes]
rs16838968	1.00[AMR][1000 genomes]
rs16838969	1.00[AMR][1000 genomes]
rs16838971	1.00[AMR][1000 genomes]
rs16838972	1.00[AMR][1000 genomes]
rs4276893	1.00[AMR][1000 genomes]
rs4540641	1.00[AMR][1000 genomes]
rs55654011	1.00[AMR][1000 genomes]
rs55917394	1.00[AMR][1000 genomes]
rs57214547	1.00[AMR][1000 genomes]
rs57468767	1.00[AMR][1000 genomes]
rs59149191	1.00[AMR][1000 genomes]
rs59797206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59985889	1.00[AMR][1000 genomes]
rs61046734	1.00[AMR][1000 genomes]
rs61512857	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132923	1.00[AMR][1000 genomes]
rs74132954	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133327	1.00[AMR][1000 genomes]
rs74133328	1.00[AMR][1000 genomes]
rs74133329	1.00[AMR][1000 genomes]
rs74133330	1.00[AMR][1000 genomes]
rs74133331	1.00[AMR][1000 genomes]
rs74133336	1.00[AMR][1000 genomes]
rs74133337	1.00[AMR][1000 genomes]
rs7527210	1.00[AMR][1000 genomes]
rs7540814	1.00[AMR][1000 genomes]
rs9803735	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1014402	chr1:195792089-195877256	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1815602	chr1:195796224-195830040	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2762212	chr1:195797081-195820890	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3338730	chr1:195800729-195803327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3398468	chr1:195801129-195803077	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195801200-195801800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:195801200-195804200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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