Variant report

Variant	rs6132696
Chromosome Location	chr20:24075875-24075876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1005527	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1012783	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1123671	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11697353	0.87[ASN][1000 genomes]
rs11699743	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12480224	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1573008	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17249809	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1884519	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2070275	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2103922	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35663453	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55921601	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132695	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6132700	0.81[EUR][1000 genomes]
rs6138201	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6138203	0.81[EUR][1000 genomes]
rs6138207	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6138210	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61657263	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7262390	0.81[EUR][1000 genomes]
rs761863	0.82[EUR][1000 genomes]
rs910776	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24070200-24076000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:24075000-24078400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:24075000-24081000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr20:24075200-24076200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr20:24075400-24076000	Weak transcription	Pancreas	Pancrea
6	chr20:24075400-24076400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:24075400-24077000	Enhancers	NHEK	skin
8	chr20:24075400-24077200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr20:24075400-24077200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:24075400-24077400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr20:24075600-24076200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:24075800-24076000	Enhancers	Fetal Kidney	kidney
13	chr20:24075800-24076200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr20:24075800-24076200	Enhancers	HMEC	breast
15	chr20:24075800-24076800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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