Variant report

Variant	rs6132699
Chromosome Location	chr20:24093492-24093493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24092580..24094161-chr20:24096209..24099117,2	MCF-7	breast:
2	chr20:24087517..24089373-chr20:24093201..24095054,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1160365	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34016617	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34096340	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34097439	0.89[EUR][1000 genomes]
rs34123386	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35671594	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35675087	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6036634	0.84[EUR][1000 genomes]
rs6036639	0.89[EUR][1000 genomes]
rs6036641	0.89[EUR][1000 genomes]
rs6036647	0.89[EUR][1000 genomes]
rs6049376	0.86[EUR][1000 genomes]
rs6049384	0.89[EUR][1000 genomes]
rs6049387	0.89[EUR][1000 genomes]
rs6049388	0.89[EUR][1000 genomes]
rs6049395	0.89[EUR][1000 genomes]
rs6132697	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6132698	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6132702	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6138198	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6138199	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6138206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6138211	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6138213	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62193667	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74173629	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:24090000-24093600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24093400-24093600	Bivalent Enhancer	Fetal Stomach	stomach

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