Variant report

Variant	rs6132754
Chromosome Location	chr20:24614992-24614993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24611712..24613428-chr20:24614096..24616788,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1997870	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049825	0.88[JPT][hapmap]
rs6132745	0.86[EUR][1000 genomes]
rs6138336	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
3	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
5	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
7	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
9	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr20:24611400-24615400	Weak transcription	Fetal Thymus	thymus
12	chr20:24613000-24615200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr20:24613400-24615000	Enhancers	NHEK	skin
14	chr20:24613400-24616200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr20:24613400-24616200	Enhancers	HMEC	breast
16	chr20:24613400-24616200	Enhancers	NH-A	brain
17	chr20:24613400-24616600	Enhancers	Brain Substantia Nigra	brain
18	chr20:24613400-24618000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr20:24613600-24615800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr20:24613600-24616200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:24613800-24616000	Enhancers	Brain Anterior Caudate	brain
22	chr20:24613800-24616000	Enhancers	NHDF-Ad	bronchial
23	chr20:24613800-24616200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr20:24613800-24616200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr20:24613800-24618000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr20:24614000-24615200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr20:24614000-24615200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr20:24614000-24615200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr20:24614000-24615600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr20:24614000-24616000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr20:24614000-24619400	Weak transcription	Gastric	stomach
32	chr20:24614200-24615400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr20:24614200-24615400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr20:24614200-24619200	Weak transcription	Aorta	Aorta
35	chr20:24614400-24616000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr20:24614400-24616200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr20:24614400-24616600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr20:24614600-24615000	Enhancers	A549	lung
39	chr20:24614600-24615400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr20:24614600-24615400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr20:24614600-24615400	Weak transcription	Lung	lung
42	chr20:24614600-24615600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr20:24614600-24615600	Weak transcription	Left Ventricle	heart
44	chr20:24614600-24619800	Weak transcription	Esophagus	oesophagus
45	chr20:24614800-24615200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr20:24614800-24616200	Enhancers	Brain Cingulate Gyrus	brain
47	chr20:24614800-24616400	Enhancers	Brain Angular Gyrus	brain
48	chr20:24614800-24616600	Enhancers	HSMM	muscle
49	chr20:24614800-24617000	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr20:24614800-24617800	Enhancers	HUES64 Cell Line	embryonic stem cell

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