Variant report

Variant	rs61329931
Chromosome Location	chr5:152443255-152443256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10477042	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10515679	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1438930	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1438938	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113869	0.81[EUR][1000 genomes]
rs17113875	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866419	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866420	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866421	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2118790	0.81[EUR][1000 genomes]
rs2882067	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34004416	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56369204	0.83[EUR][1000 genomes]
rs6877355	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv600089	chr5:152200109-152488891	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1017812	chr5:152220845-152467431	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv537928	chr5:152220845-152467431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv883050	chr5:152277537-152540026	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv949596	chr5:152343943-152548821	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152442600-152443400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr5:152442800-152443400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:152442800-152443400	Enhancers	Aorta	Aorta
4	chr5:152442800-152444200	Enhancers	HMEC	breast
5	chr5:152443200-152443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:152443200-152443800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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