Variant report

Variant	rs61333809
Chromosome Location	chr2:210584319-210584320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210583521..210585486-chr2:210593240..210596147,2	MCF-7	breast:

Extended variants
information (count: 158 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10165558	0.84[ASN][1000 genomes]
rs10169017	0.93[ASN][1000 genomes]
rs10172200	0.93[ASN][1000 genomes]
rs10183590	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10183604	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189911	0.83[ASN][1000 genomes]
rs10193321	0.93[ASN][1000 genomes]
rs10196314	0.93[ASN][1000 genomes]
rs10196600	0.93[ASN][1000 genomes]
rs10206817	0.93[ASN][1000 genomes]
rs10490021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490022	0.85[EUR][1000 genomes]
rs10804176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932305	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932306	0.85[EUR][1000 genomes]
rs11674672	0.81[EUR][1000 genomes]
rs11674950	0.85[EUR][1000 genomes]
rs11677476	0.81[EUR][1000 genomes]
rs11677489	0.85[EUR][1000 genomes]
rs11677975	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679862	0.81[EUR][1000 genomes]
rs11680007	0.85[EUR][1000 genomes]
rs11680964	0.81[EUR][1000 genomes]
rs11682692	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687043	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11689771	0.85[EUR][1000 genomes]
rs11691800	0.98[ASN][1000 genomes]
rs11691894	0.98[ASN][1000 genomes]
rs11692075	0.98[ASN][1000 genomes]
rs11692345	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11692608	0.85[EUR][1000 genomes]
rs11693202	0.85[EUR][1000 genomes]
rs11884376	0.85[EUR][1000 genomes]
rs11887161	0.85[EUR][1000 genomes]
rs11898077	0.94[EUR][1000 genomes]
rs11900602	0.85[EUR][1000 genomes]
rs12105654	0.90[EUR][1000 genomes]
rs12105660	0.89[EUR][1000 genomes]
rs12613705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12614031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12615516	0.85[EUR][1000 genomes]
rs12618080	0.93[ASN][1000 genomes]
rs12619203	0.85[EUR][1000 genomes]
rs12619253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622305	0.81[EUR][1000 genomes]
rs13385585	0.93[ASN][1000 genomes]
rs13409134	0.98[ASN][1000 genomes]
rs13422521	0.96[ASN][1000 genomes]
rs13423127	0.95[ASN][1000 genomes]
rs1476876	0.85[EUR][1000 genomes]
rs1476877	0.85[EUR][1000 genomes]
rs1509468	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16843351	0.93[ASN][1000 genomes]
rs16843354	0.93[ASN][1000 genomes]
rs16843360	0.93[ASN][1000 genomes]
rs16843382	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16843421	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16843453	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843515	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843544	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843614	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843618	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843651	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2191910	0.98[ASN][1000 genomes]
rs2215624	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215625	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2239552	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2239553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268042	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268044	1.00[ASN][1000 genomes]
rs2268045	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2271252	0.93[ASN][1000 genomes]
rs2284359	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2284360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286849	0.98[ASN][1000 genomes]
rs2286850	1.00[ASN][1000 genomes]
rs2300154	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663647	0.96[ASN][1000 genomes]
rs2663658	0.92[ASN][1000 genomes]
rs2710480	0.84[ASN][1000 genomes]
rs2710482	0.93[ASN][1000 genomes]
rs28435689	0.93[ASN][1000 genomes]
rs28666486	0.98[ASN][1000 genomes]
rs28758270	0.98[ASN][1000 genomes]
rs35337581	0.81[EUR][1000 genomes]
rs35872449	0.85[EUR][1000 genomes]
rs3738935	0.98[ASN][1000 genomes]
rs3754597	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768810	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768811	1.00[ASN][1000 genomes]
rs3768813	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768814	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768815	1.00[ASN][1000 genomes]
rs3768816	0.98[ASN][1000 genomes]
rs3768820	0.98[ASN][1000 genomes]
rs3768821	0.95[ASN][1000 genomes]
rs3768823	0.98[ASN][1000 genomes]
rs3768826	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768827	0.96[ASN][1000 genomes]
rs3768828	0.96[ASN][1000 genomes]
rs3768830	0.96[ASN][1000 genomes]
rs3768832	0.96[ASN][1000 genomes]
rs3768833	0.96[ASN][1000 genomes]
rs3768834	0.96[ASN][1000 genomes]
rs3768835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3820746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820748	0.98[ASN][1000 genomes]
rs3886931	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4673486	1.00[ASN][1000 genomes]
rs56659802	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56825045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57542539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57637604	0.85[EUR][1000 genomes]
rs57853945	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58248939	0.85[EUR][1000 genomes]
rs58295121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58525719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58779755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59155421	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59555743	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60161291	0.85[EUR][1000 genomes]
rs60640585	0.85[EUR][1000 genomes]
rs61356588	0.85[EUR][1000 genomes]
rs61420319	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6709925	0.98[ASN][1000 genomes]
rs6716831	0.85[EUR][1000 genomes]
rs6717554	0.93[ASN][1000 genomes]
rs6720659	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724834	0.98[ASN][1000 genomes]
rs6742314	0.85[EUR][1000 genomes]
rs6746029	0.93[ASN][1000 genomes]
rs73074733	0.94[EUR][1000 genomes]
rs73074750	0.85[EUR][1000 genomes]
rs73074751	0.85[EUR][1000 genomes]
rs73074763	0.85[EUR][1000 genomes]
rs73074778	0.85[EUR][1000 genomes]
rs73074779	0.85[EUR][1000 genomes]
rs73074784	0.85[EUR][1000 genomes]
rs73074787	0.85[EUR][1000 genomes]
rs73074791	0.85[EUR][1000 genomes]
rs73074801	0.81[EUR][1000 genomes]
rs73076704	0.81[EUR][1000 genomes]
rs73076710	0.81[EUR][1000 genomes]
rs741006	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741007	1.00[ASN][1000 genomes]
rs7564369	0.85[EUR][1000 genomes]
rs7567257	0.96[ASN][1000 genomes]
rs7594601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595017	0.85[EUR][1000 genomes]
rs7596811	0.96[ASN][1000 genomes]
rs975551	0.85[EUR][1000 genomes]
rs975552	0.85[EUR][1000 genomes]
rs994862	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210541800-210596400	Weak transcription	Gastric	stomach
4	chr2:210544000-210596600	Weak transcription	Ovary	ovary
5	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
7	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
8	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:210559600-210588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210562400-210593600	Weak transcription	Fetal Brain Male	brain
11	chr2:210567000-210585000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:210571800-210598600	Weak transcription	Brain Substantia Nigra	brain
13	chr2:210573400-210585000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210574800-210587600	Weak transcription	Aorta	Aorta
15	chr2:210575000-210587800	Weak transcription	Brain Anterior Caudate	brain
16	chr2:210575200-210586800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:210575800-210587600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:210580400-210584600	Strong transcription	Brain Germinal Matrix	brain
19	chr2:210581000-210600600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:210582200-210584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:210582400-210586600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:210583800-210584400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:210583800-210584400	Enhancers	HMEC	breast
24	chr2:210583800-210584600	Enhancers	NHEK	skin
25	chr2:210584000-210584400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:210584200-210585200	Strong transcription	Fetal Brain Female	brain

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