Variant report

Variant	rs61336224
Chromosome Location	chr5:91863493-91863494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10077094	0.80[AFR][1000 genomes]
rs10079736	0.80[AFR][1000 genomes]
rs10476525	0.80[AFR][1000 genomes]
rs17082132	0.80[AFR][1000 genomes]
rs6867083	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4915	chr5:91836073-91876327	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv969234	chr5:91862074-91866671	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91854600-91864200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:91862600-91864400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:91862800-91863800	Enhancers	HSMMtube	muscle
4	chr5:91862800-91863800	Enhancers	Osteobl	bone
5	chr5:91862800-91864400	Enhancers	NHDF-Ad	bronchial
6	chr5:91863000-91863600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:91863000-91864200	Enhancers	HSMM	muscle
8	chr5:91863000-91864400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:91863400-91864200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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