Variant report

Variant	rs61366849
Chromosome Location	chr12:11854254-11854255
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11054420	1.00[EUR][1000 genomes]
rs12296206	1.00[EUR][1000 genomes]
rs1641623	1.00[EUR][1000 genomes]
rs55959071	1.00[EUR][1000 genomes]
rs58160049	1.00[EUR][1000 genomes]
rs59624591	1.00[EUR][1000 genomes]
rs59692713	1.00[EUR][1000 genomes]
rs60499077	1.00[EUR][1000 genomes]
rs7294334	1.00[EUR][1000 genomes]
rs7305726	1.00[EUR][1000 genomes]
rs7306490	1.00[EUR][1000 genomes]
rs7308344	1.00[EUR][1000 genomes]
rs73288732	1.00[EUR][1000 genomes]
rs73288733	1.00[EUR][1000 genomes]
rs73288736	1.00[EUR][1000 genomes]
rs73288738	1.00[EUR][1000 genomes]
rs73288740	1.00[EUR][1000 genomes]
rs73288746	1.00[EUR][1000 genomes]
rs73288748	1.00[EUR][1000 genomes]
rs73288753	1.00[EUR][1000 genomes]
rs73288756	1.00[EUR][1000 genomes]
rs73288757	1.00[EUR][1000 genomes]
rs73288764	1.00[EUR][1000 genomes]
rs74060807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060809	1.00[AMR][1000 genomes]
rs74060969	1.00[EUR][1000 genomes]
rs74061000	1.00[EUR][1000 genomes]
rs74062355	1.00[EUR][1000 genomes]
rs74062357	1.00[EUR][1000 genomes]
rs74062364	1.00[EUR][1000 genomes]
rs7975230	1.00[EUR][1000 genomes]
rs7975331	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870039	chr12:11800363-11996598	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11827400-11879800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr12:11837200-11858600	Weak transcription	Fetal Intestine Large	intestine
3	chr12:11838000-11858000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:11838800-11872200	Weak transcription	Primary T cells from cord blood	blood
5	chr12:11839200-11857800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr12:11839400-11859000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr12:11840800-11854400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:11840800-11859200	Weak transcription	Fetal Kidney	kidney
9	chr12:11841200-11856800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr12:11841800-11860200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr12:11841800-11867400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr12:11844200-11864600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr12:11846200-11858600	Weak transcription	Fetal Intestine Small	intestine
14	chr12:11846800-11857000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:11847000-11854600	Weak transcription	Lung	lung
16	chr12:11847000-11854800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr12:11847000-11859400	Weak transcription	Brain Angular Gyrus	brain
18	chr12:11847400-11854400	Weak transcription	Brain Hippocampus Middle	brain
19	chr12:11848000-11872200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:11848400-11858600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr12:11848400-11861200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr12:11848600-11858000	Weak transcription	HSMMtube	muscle
23	chr12:11848800-11854600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:11848800-11854600	Weak transcription	Gastric	stomach
25	chr12:11848800-11859400	Weak transcription	Right Ventricle	heart
26	chr12:11848800-11861400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:11848800-11879600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr12:11849000-11859200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr12:11849400-11854600	Weak transcription	Stomach Mucosa	stomach
30	chr12:11849400-11855800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr12:11849400-11856800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr12:11849400-11865000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr12:11849600-11854600	Weak transcription	Esophagus	oesophagus
34	chr12:11849600-11854600	Weak transcription	Dnd41	blood
35	chr12:11850400-11854600	Weak transcription	Left Ventricle	heart
36	chr12:11850400-11858800	Weak transcription	Thymus	Thymus
37	chr12:11851200-11861000	Weak transcription	Primary B cells from cord blood	blood
38	chr12:11851400-11855400	Enhancers	HepG2	liver
39	chr12:11851400-11858000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr12:11851600-11854400	Weak transcription	Pancreas	Pancrea
41	chr12:11851600-11854400	Weak transcription	Psoas Muscle	Psoas
42	chr12:11851600-11854600	Weak transcription	Adipose Nuclei	Adipose
43	chr12:11851600-11857000	Weak transcription	Aorta	Aorta
44	chr12:11851600-11857800	Weak transcription	Osteobl	bone
45	chr12:11852000-11855600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:11852600-11855000	Weak transcription	Hela-S3	cervix
47	chr12:11852600-11855400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr12:11852600-11855400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr12:11852600-11855400	Enhancers	Right Atrium	heart
50	chr12:11852600-11855800	Genic enhancers	GM12878-XiMat	blood

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