Variant report
| Variant | rs6138199 |
|---|---|
| Chromosome Location | chr20:24069980-24069981 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1160365 | 0.87[EUR][1000 genomes] |
| rs34016617 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs34096340 | 0.87[EUR][1000 genomes] |
| rs34097439 | 1.00[EUR][1000 genomes] |
| rs34123386 | 0.87[EUR][1000 genomes] |
| rs35671594 | 0.87[EUR][1000 genomes] |
| rs35675087 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6036634 | 0.95[EUR][1000 genomes] |
| rs6036639 | 1.00[EUR][1000 genomes] |
| rs6036641 | 1.00[EUR][1000 genomes] |
| rs6036647 | 1.00[EUR][1000 genomes] |
| rs6049376 | 0.97[EUR][1000 genomes] |
| rs6049384 | 1.00[EUR][1000 genomes] |
| rs6049387 | 1.00[EUR][1000 genomes] |
| rs6049388 | 1.00[EUR][1000 genomes] |
| rs6049395 | 1.00[EUR][1000 genomes] |
| rs6132697 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6132698 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6132699 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6132702 | 0.87[EUR][1000 genomes] |
| rs6138198 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6138206 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6138211 | 0.87[EUR][1000 genomes] |
| rs6138213 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs62193667 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs74173629 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1056491 | chr20:23955040-24105080 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24068200-24072000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr20:24069600-24070000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
