Variant report

Variant	rs6138203
Chromosome Location	chr20:24083193-24083194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:24082693..24083584-chr20:24144765..24145673,2	MCF-7	breast:
2	chr20:24082874..24083567-chr20:24762073..24762659,2	MCF-7	breast:
3	chr20:24080843..24083360-chr20:24088770..24090295,2	MCF-7	breast:
4	chr20:24082767..24083750-chr20:24144753..24145406,4	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11696686	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1884519	0.81[EUR][1000 genomes]
rs2224232	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35815769	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55921601	0.81[EUR][1000 genomes]
rs6114487	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6114488	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6114489	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6132695	0.81[EUR][1000 genomes]
rs6132696	0.81[EUR][1000 genomes]
rs6132700	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6138201	0.81[EUR][1000 genomes]
rs6138207	0.81[EUR][1000 genomes]
rs6138209	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6138210	0.81[EUR][1000 genomes]
rs6138214	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7262390	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs761863	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761864	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24079200-24085200	Enhancers	NHEK	skin
2	chr20:24079400-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:24080000-24083200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:24080200-24083200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:24081000-24083800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr20:24081200-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr20:24081400-24083200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr20:24082600-24083600	Enhancers	Fetal Brain Male	brain
9	chr20:24082600-24088000	Enhancers	HUVEC	blood vessel
10	chr20:24082800-24083200	Flanking Active TSS	Liver	Liver
11	chr20:24082800-24083400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr20:24082800-24083400	Enhancers	Dnd41	blood
13	chr20:24082800-24083600	Enhancers	HMEC	breast
14	chr20:24082800-24084000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr20:24082800-24084200	Enhancers	Fetal Brain Female	brain
16	chr20:24082800-24085000	Enhancers	Osteobl	bone
17	chr20:24083000-24083400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:24083000-24083400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr20:24083000-24083400	Flanking Active TSS	A549	lung
20	chr20:24083000-24084800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr20:24083000-24085000	Enhancers	NH-A	brain
22	chr20:24083000-24085600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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