Variant report

Variant	rs6138206
Chromosome Location	chr20:24086817-24086818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1160365	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34016617	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34096340	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34097439	0.95[EUR][1000 genomes]
rs34123386	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35671594	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35675087	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6036634	0.89[EUR][1000 genomes]
rs6036639	0.95[EUR][1000 genomes]
rs6036641	0.95[EUR][1000 genomes]
rs6036647	0.95[EUR][1000 genomes]
rs6049376	0.92[EUR][1000 genomes]
rs6049384	0.95[EUR][1000 genomes]
rs6049387	0.95[EUR][1000 genomes]
rs6049388	0.95[EUR][1000 genomes]
rs6049395	0.95[EUR][1000 genomes]
rs6132697	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6132698	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6132699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6132702	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138198	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6138199	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6138211	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138213	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62193667	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74173629	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24082600-24088000	Enhancers	HUVEC	blood vessel
2	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24085200-24087400	Weak transcription	Liver	Liver
4	chr20:24085800-24087400	Enhancers	NHEK	skin
5	chr20:24086000-24087400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:24086000-24087400	Enhancers	NH-A	brain
7	chr20:24086000-24087400	Enhancers	Osteobl	bone
8	chr20:24086200-24087000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr20:24086200-24087400	Enhancers	HMEC	breast
10	chr20:24086200-24087600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr20:24086200-24088000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:24086600-24087400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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