Variant report

Variant	rs6138211
Chromosome Location	chr20:24100323-24100324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1160365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34016617	0.87[EUR][1000 genomes]
rs34096340	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34097439	0.87[EUR][1000 genomes]
rs34123386	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35671594	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35675087	0.87[EUR][1000 genomes]
rs6036634	0.81[EUR][1000 genomes]
rs6036639	0.87[EUR][1000 genomes]
rs6036641	0.87[EUR][1000 genomes]
rs6036647	0.87[EUR][1000 genomes]
rs6049376	0.84[EUR][1000 genomes]
rs6049384	0.87[EUR][1000 genomes]
rs6049387	0.87[EUR][1000 genomes]
rs6049388	0.87[EUR][1000 genomes]
rs6049395	0.87[EUR][1000 genomes]
rs6132697	0.87[EUR][1000 genomes]
rs6132698	0.87[EUR][1000 genomes]
rs6132699	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6132702	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138198	0.84[EUR][1000 genomes]
rs6138199	0.87[EUR][1000 genomes]
rs6138206	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62193667	0.87[EUR][1000 genomes]
rs74173629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24098200-24100600	Enhancers	Ovary	ovary
2	chr20:24098200-24100800	Enhancers	HUVEC	blood vessel
3	chr20:24098400-24100800	Enhancers	Fetal Thymus	thymus
4	chr20:24098800-24100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr20:24099200-24100400	Enhancers	Esophagus	oesophagus
6	chr20:24099200-24100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:24099200-24100600	Enhancers	Fetal Stomach	stomach
8	chr20:24099200-24101000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:24099600-24100600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:24099600-24102400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr20:24099800-24100600	Enhancers	HMEC	breast
12	chr20:24099800-24103400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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