Variant report

Variant	rs6138319
Chromosome Location	chr20:24526892-24526893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6036832	0.84[ASN][1000 genomes]
rs6049765	0.81[ASN][1000 genomes]
rs6049768	0.84[ASN][1000 genomes]
rs6049771	0.85[ASN][1000 genomes]
rs6049775	0.88[ASN][1000 genomes]
rs6114768	0.83[ASN][1000 genomes]
rs6132744	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138318	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs715863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24521200-24528400	Weak transcription	HMEC	breast
2	chr20:24522800-24528400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr20:24523000-24528200	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24523400-24527600	Weak transcription	Fetal Brain Female	brain
5	chr20:24523600-24530800	Weak transcription	Fetal Heart	heart
6	chr20:24523800-24528800	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr20:24523800-24528800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24525000-24527000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:24525000-24527000	Strong transcription	Brain Hippocampus Middle	brain
10	chr20:24525000-24528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
12	chr20:24526200-24527000	Weak transcription	Right Ventricle	heart
13	chr20:24526600-24527400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr20:24526600-24527400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr20:24526600-24527400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
16	chr20:24526600-24527400	ZNF genes & repeats	Brain Substantia Nigra	brain
17	chr20:24526600-24527400	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr20:24526600-24529400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr20:24526800-24527200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr20:24526800-24527200	ZNF genes & repeats	Brain Angular Gyrus	brain
21	chr20:24526800-24527200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
22	chr20:24526800-24527400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr20:24526800-24527400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
24	chr20:24526800-24527400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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