Variant report

Variant	rs6138332
Chromosome Location	chr20:24564317-24564318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1326299	0.86[JPT][hapmap]
rs1409371	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs1980822	0.81[JPT][hapmap]
rs1980823	0.86[JPT][hapmap]
rs2018095	0.82[ASN][1000 genomes]
rs4815278	0.83[CHD][hapmap];0.85[JPT][hapmap]
rs4815279	0.85[JPT][hapmap]
rs6036837	0.82[JPT][hapmap]
rs6083558	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs6083562	0.81[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs6132750	0.95[JPT][hapmap]
rs6138330	0.81[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs6138331	0.95[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24549800-24565800	Weak transcription	Thymus	Thymus
3	chr20:24553800-24564800	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24554000-24564800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr20:24560800-24564800	Weak transcription	Brain Angular Gyrus	brain
6	chr20:24560800-24565000	Weak transcription	Fetal Muscle Leg	muscle
7	chr20:24561000-24565000	Weak transcription	Brain Substantia Nigra	brain
8	chr20:24561800-24565000	Weak transcription	Brain Germinal Matrix	brain
9	chr20:24562400-24567400	Weak transcription	Fetal Brain Female	brain
10	chr20:24562600-24565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr20:24562600-24570000	Weak transcription	Spleen	Spleen
12	chr20:24562800-24564800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr20:24563400-24566400	Weak transcription	Fetal Brain Male	brain
14	chr20:24564200-24564600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr20:24564200-24564600	Weak transcription	Brain Hippocampus Middle	brain
16	chr20:24564200-24565600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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