Variant report

Variant	rs61384041
Chromosome Location	chr20:24146792-24146793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57623193	0.86[AFR][1000 genomes]
rs73902710	1.00[AFR][1000 genomes]
rs73905151	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24134400-24146800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24145200-24146800	Enhancers	Colon Smooth Muscle	Colon
3	chr20:24145200-24147400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:24145200-24147400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:24145400-24147800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr20:24145400-24148000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr20:24145800-24147200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr20:24146400-24146800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr20:24146600-24147600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr20:24146600-24147600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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