Variant report
Variant | rs61395607 |
---|---|
Chromosome Location | chr5:119483262-119483263 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10052564 | 0.84[ASN][1000 genomes] |
rs10053118 | 0.94[ASN][1000 genomes] |
rs10066059 | 0.83[ASN][1000 genomes] |
rs10079429 | 0.95[ASN][1000 genomes] |
rs1031130 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1031131 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10900735 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11951475 | 0.84[ASN][1000 genomes] |
rs11951498 | 0.84[ASN][1000 genomes] |
rs12517429 | 0.94[ASN][1000 genomes] |
rs12520161 | 0.94[ASN][1000 genomes] |
rs12520785 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12520817 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12521813 | 0.94[ASN][1000 genomes] |
rs12522508 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12523293 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13183113 | 0.95[ASN][1000 genomes] |
rs1348474 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1348478 | 0.84[ASN][1000 genomes] |
rs1348479 | 0.84[ASN][1000 genomes] |
rs1373317 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1373318 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1373320 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1373324 | 0.85[ASN][1000 genomes] |
rs1443966 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1443969 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1443970 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1443980 | 0.84[ASN][1000 genomes] |
rs1443981 | 0.83[ASN][1000 genomes] |
rs1443985 | 0.84[ASN][1000 genomes] |
rs1443986 | 0.84[ASN][1000 genomes] |
rs1443987 | 0.84[ASN][1000 genomes] |
rs1470349 | 0.83[ASN][1000 genomes] |
rs1470350 | 0.80[ASN][1000 genomes] |
rs17146058 | 0.84[ASN][1000 genomes] |
rs17146068 | 0.85[ASN][1000 genomes] |
rs17146098 | 0.83[ASN][1000 genomes] |
rs17146149 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs17146179 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17146184 | 0.95[ASN][1000 genomes] |
rs1862306 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1862307 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1907193 | 0.84[ASN][1000 genomes] |
rs1907194 | 0.84[ASN][1000 genomes] |
rs1981819 | 0.95[ASN][1000 genomes] |
rs2053622 | 0.85[ASN][1000 genomes] |
rs2059093 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2130738 | 0.84[ASN][1000 genomes] |
rs2130739 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2161303 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2166013 | 0.83[ASN][1000 genomes] |
rs28635608 | 0.87[ASN][1000 genomes] |
rs2897117 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs35236191 | 0.82[ASN][1000 genomes] |
rs35463506 | 0.87[ASN][1000 genomes] |
rs35648087 | 0.86[ASN][1000 genomes] |
rs35758661 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs41447148 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4446498 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4446499 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4868423 | 0.94[ASN][1000 genomes] |
rs55635066 | 0.84[ASN][1000 genomes] |
rs56151766 | 0.84[ASN][1000 genomes] |
rs56186068 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs56352443 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs57510292 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs59845464 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs60408531 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs60547170 | 0.86[ASN][1000 genomes] |
rs60772350 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs62376993 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs62376998 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs62377003 | 0.82[ASN][1000 genomes] |
rs62377004 | 0.80[ASN][1000 genomes] |
rs62377005 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6595211 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6866827 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6868570 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6868780 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6873570 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6874351 | 0.83[ASN][1000 genomes] |
rs6874504 | 0.83[ASN][1000 genomes] |
rs6877170 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6879182 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6882395 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6883507 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6888177 | 0.84[ASN][1000 genomes] |
rs6888446 | 0.84[ASN][1000 genomes] |
rs6889996 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6895104 | 0.80[ASN][1000 genomes] |
rs6898633 | 0.84[ASN][1000 genomes] |
rs719191 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs73266681 | 0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7702005 | 0.84[ASN][1000 genomes] |
rs7705480 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7707700 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7722633 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7730558 | 0.94[ASN][1000 genomes] |
rs9327125 | 0.85[ASN][1000 genomes] |
rs9327129 | 0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs953189 | 0.83[ASN][1000 genomes] |
rs982358 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs982605 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs982606 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs982607 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs994630 | 0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024455 | chr5:118770429-119487982 | Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv1016271 | chr5:118836891-119487982 | Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1023146 | chr5:119301891-119623417 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv537883 | chr5:119301891-119623417 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | esv3331559 | chr5:119306944-119536554 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv532200 | chr5:119317901-120102513 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
7 | nsv882780 | chr5:119332670-119488924 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv882781 | chr5:119369334-119557828 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | nsv599600 | chr5:119399177-119507243 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
10 | nsv1026457 | chr5:119406305-119493661 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
11 | nsv537885 | chr5:119406305-119493661 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
12 | nsv432803 | chr5:119419101-119659101 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
13 | esv2762547 | chr5:119427979-119487383 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
14 | nsv1016024 | chr5:119460796-119509057 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
15 | nsv1018247 | chr5:119469805-119511846 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:119482400-119487600 | Weak transcription | NHLF | lung |
2 | chr5:119483000-119486600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
3 | chr5:119483000-119486600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
4 | chr5:119483000-119487000 | Weak transcription | Osteobl | bone |
5 | chr5:119483000-119487400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
6 | chr5:119483000-119487400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
7 | chr5:119483000-119487600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
8 | chr5:119483200-119486600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |