Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:93473892..93475955-chr11:93507509..93510269,2	K562	blood:
2	chr11:93508723..93511571-chr11:93516504..93518182,2	MCF-7	breast:
3	chr11:93477445..93479769-chr11:93508561..93510489,2	MCF-7	breast:
4	chr11:93507185..93509906-chr11:93516225..93519167,3	K562	blood:
5	chr11:93473228..93477931-chr11:93504576..93509493,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10741468	1.00[EUR][1000 genomes]
rs10765632	1.00[EUR][1000 genomes]
rs10831087	1.00[EUR][1000 genomes]
rs1939566	1.00[EUR][1000 genomes]
rs2434983	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs4595504	1.00[EUR][1000 genomes]
rs584474	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604414	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs607826	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs622231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs624883	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483257	1.00[EUR][1000 genomes]
rs6483263	1.00[EUR][1000 genomes]
rs653934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs655208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs657177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs666470	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7123801	1.00[EUR][1000 genomes]
rs73561150	1.00[EUR][1000 genomes]
rs73561172	1.00[EUR][1000 genomes]
rs73563050	1.00[EUR][1000 genomes]
rs7939434	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93492200-93516600	Weak transcription	Psoas Muscle	Psoas
2	chr11:93492200-93516800	Weak transcription	Right Ventricle	heart
3	chr11:93496000-93513600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:93498000-93516600	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:93498600-93516600	Weak transcription	Hela-S3	cervix
6	chr11:93499200-93516600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:93499800-93516600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:93505800-93516600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:93506200-93516600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:93506400-93516600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:93506600-93510000	Weak transcription	Spleen	Spleen
12	chr11:93506600-93516600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:93506600-93516600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:93506800-93513000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:93506800-93513200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:93506800-93516600	Weak transcription	Brain Germinal Matrix	brain
17	chr11:93507600-93516600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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