Variant report

Variant	rs61401625
Chromosome Location	chr10:25640525-25640526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12770371	0.82[ASN][1000 genomes]
rs12777013	0.82[ASN][1000 genomes]
rs12778704	0.82[ASN][1000 genomes]
rs12778817	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34165837	0.82[ASN][1000 genomes]
rs34207877	0.82[ASN][1000 genomes]
rs34393723	0.82[ASN][1000 genomes]
rs34427293	0.82[ASN][1000 genomes]
rs34573334	0.82[ASN][1000 genomes]
rs34784889	0.82[ASN][1000 genomes]
rs34823294	0.82[ASN][1000 genomes]
rs34893617	0.82[ASN][1000 genomes]
rs35173442	0.82[ASN][1000 genomes]
rs35257646	0.82[ASN][1000 genomes]
rs35316012	0.82[ASN][1000 genomes]
rs35361058	0.82[ASN][1000 genomes]
rs35677024	0.82[ASN][1000 genomes]
rs35677680	0.82[ASN][1000 genomes]
rs35709145	0.82[ASN][1000 genomes]
rs35850110	0.82[ASN][1000 genomes]
rs35898125	0.82[ASN][1000 genomes]
rs35989426	0.82[ASN][1000 genomes]
rs36035509	0.82[ASN][1000 genomes]
rs55979690	0.90[ASN][1000 genomes]
rs56845226	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56982575	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58180203	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58697202	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58857830	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59342106	0.82[ASN][1000 genomes]
rs61195869	0.82[ASN][1000 genomes]
rs61261208	0.82[ASN][1000 genomes]
rs71495430	0.82[ASN][1000 genomes]
rs71495431	0.82[ASN][1000 genomes]
rs71495432	0.82[ASN][1000 genomes]
rs71495433	0.82[ASN][1000 genomes]
rs71495434	0.82[ASN][1000 genomes]
rs71495435	0.82[ASN][1000 genomes]
rs71495436	0.82[ASN][1000 genomes]
rs71495437	0.82[ASN][1000 genomes]
rs71495452	0.82[ASN][1000 genomes]
rs74123864	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74123865	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74123866	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74123867	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74123869	0.82[ASN][1000 genomes]
rs74123870	0.82[ASN][1000 genomes]
rs74123871	0.82[ASN][1000 genomes]
rs74123872	0.82[ASN][1000 genomes]
rs74123875	0.82[ASN][1000 genomes]
rs74126023	0.82[ASN][1000 genomes]
rs74126025	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3371273	chr10:25636346-25640744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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