Variant report

Variant	rs61414509
Chromosome Location	chr11:59446534-59446535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11828872	0.86[AFR][1000 genomes]
rs60220228	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59444000-59447400	Weak transcription	Fetal Intestine Large	intestine
2	chr11:59444000-59447800	Weak transcription	Liver	Liver
3	chr11:59444200-59446800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:59445600-59446600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:59446000-59447000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:59446000-59447000	Enhancers	HMEC	breast
7	chr11:59446200-59446600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:59446400-59447000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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