Variant report

Variant	rs61422649
Chromosome Location	chr21:41203751-41203752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs16998635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16998638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16998655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2410184	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837210	0.85[EUR][1000 genomes]
rs2837235	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2837238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837241	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837242	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837243	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837251	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2837252	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2837254	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2898386	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378814	0.87[ASN][1000 genomes]
rs4390832	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs461503	0.87[ASN][1000 genomes]
rs55655475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55684706	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55742790	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55760722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55776043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55781006	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55860353	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55861818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55884303	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55906724	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55909108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909830	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55926748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55928419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934901	0.98[ASN][1000 genomes]
rs56036187	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56090566	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56115387	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56124117	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56131077	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56347307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56366918	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56373284	0.84[EUR][1000 genomes]
rs56374307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56389826	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57022486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57042023	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57347860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57470272	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57759710	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57782102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58091194	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58188293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59123531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131687	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59997683	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60383387	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61005556	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61437687	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61549838	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6517572	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66495451	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66560117	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66704860	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66722528	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66739666	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66804248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66820219	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66920289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66936107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66957543	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66958418	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66999256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67044789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67201726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67229478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67233221	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67499448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67562015	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67613662	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67633796	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67676396	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67684072	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67833859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67897619	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67941032	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68016066	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68035842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68101788	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68176580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720942	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7278863	0.89[EUR][1000 genomes]
rs7279032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7281712	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7283816	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73219408	0.89[EUR][1000 genomes]
rs73219473	0.89[EUR][1000 genomes]
rs73219487	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73219495	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221226	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221227	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221245	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221246	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221249	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73221251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221252	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221254	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs741864	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8127171	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8133712	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8134022	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986350	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061454	chr21:40757973-41265404	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1057956	chr21:40907707-41393396	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv544444	chr21:40907707-41393396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1065086	chr21:41034806-41429078	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv544445	chr21:41034806-41429078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv834099	chr21:41076873-41206030	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv11797	chr21:41203032-41208686	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41199000-41219800	Weak transcription	Pancreas	Pancrea

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