Variant report

Variant	rs61488890
Chromosome Location	chr2:145648657-145648658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10928234	1.00[EUR][1000 genomes]
rs56260527	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59001323	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60211308	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60943334	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73005549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73007426	1.00[EUR][1000 genomes]
rs73007432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73007433	1.00[EUR][1000 genomes]
rs7557112	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7573849	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7600529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv932113	chr2:145515124-145844491	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145647800-145649000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:145648400-145648800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:145648400-145648800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:145648400-145649000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:145648400-145649000	Enhancers	HSMMtube	muscle
6	chr2:145648400-145649000	Flanking Active TSS	K562	blood
7	chr2:145648600-145648800	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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