Variant report

Variant	rs61489113
Chromosome Location	chr19:19792331-19792332
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11878966	1.00[EUR][1000 genomes]
rs11879251	1.00[EUR][1000 genomes]
rs11880104	1.00[EUR][1000 genomes]
rs11882164	1.00[EUR][1000 genomes]
rs11883102	1.00[EUR][1000 genomes]
rs17378427	1.00[EUR][1000 genomes]
rs34087491	1.00[EUR][1000 genomes]
rs57474361	1.00[EUR][1000 genomes]
rs58294398	1.00[EUR][1000 genomes]
rs60101043	1.00[EUR][1000 genomes]
rs60133934	1.00[EUR][1000 genomes]
rs60610603	1.00[EUR][1000 genomes]
rs7247366	1.00[EUR][1000 genomes]
rs7248802	1.00[EUR][1000 genomes]
rs7250144	1.00[EUR][1000 genomes]
rs7253515	1.00[EUR][1000 genomes]
rs7257247	1.00[EUR][1000 genomes]
rs7258865	1.00[EUR][1000 genomes]
rs73532149	0.84[AFR][1000 genomes]
rs73537224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73537243	0.91[AFR][1000 genomes]
rs73537247	1.00[EUR][1000 genomes]
rs73537262	1.00[EUR][1000 genomes]
rs73537266	1.00[EUR][1000 genomes]
rs73539233	1.00[EUR][1000 genomes]
rs73539261	1.00[EUR][1000 genomes]
rs73541334	1.00[EUR][1000 genomes]
rs73541344	1.00[EUR][1000 genomes]
rs73541360	1.00[EUR][1000 genomes]
rs73541377	1.00[EUR][1000 genomes]
rs8105557	1.00[EUR][1000 genomes]
rs8111841	1.00[EUR][1000 genomes]
rs8112744	1.00[EUR][1000 genomes]
rs8113100	1.00[EUR][1000 genomes]
rs9676945	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3330851	chr19:19755507-19852881	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv519533	chr19:19789528-19831544	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19780600-19795000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:19780800-19795000	ZNF genes & repeats	Fetal Thymus	thymus
3	chr19:19780800-19795000	ZNF genes & repeats	Thymus	Thymus
4	chr19:19781000-19792600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:19781200-19795800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr19:19781400-19792800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
7	chr19:19781400-19793000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
8	chr19:19781400-19793400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr19:19781600-19795000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr19:19781800-19794400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr19:19782000-19795000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:19782000-19795600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:19782000-19798200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr19:19782600-19793800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
15	chr19:19782800-19795000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:19783000-19793400	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr19:19783000-19795000	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr19:19783400-19795000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr19:19784800-19792600	ZNF genes & repeats	GM12878-XiMat	blood
20	chr19:19784800-19792800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
21	chr19:19785000-19792600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:19785000-19792600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
23	chr19:19785000-19792600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
24	chr19:19785000-19792600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr19:19785000-19794000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr19:19785200-19792600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:19785200-19792600	ZNF genes & repeats	Liver	Liver
28	chr19:19785200-19793400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:19785800-19792600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr19:19786200-19792600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr19:19786200-19793800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr19:19786600-19792600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr19:19787400-19794000	ZNF genes & repeats	Dnd41	blood
34	chr19:19787800-19792400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
35	chr19:19787800-19792600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr19:19787800-19792600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:19788000-19792600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
38	chr19:19788000-19792600	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr19:19788000-19792600	ZNF genes & repeats	Fetal Intestine Small	intestine
40	chr19:19788000-19792600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr19:19788000-19793200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr19:19788000-19793200	ZNF genes & repeats	Lung	lung
43	chr19:19788200-19792400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:19788200-19792400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr19:19788200-19792400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr19:19788200-19792600	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr19:19788400-19793400	ZNF genes & repeats	Fetal Stomach	stomach
48	chr19:19788600-19792800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr19:19789400-19792400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr19:19789600-19792400	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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