Variant report

Variant	rs61493023
Chromosome Location	chr3:85088302-85088303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17022320	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85068600-85090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85081400-85088800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:85082200-85088800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:85082600-85090000	Weak transcription	Fetal Brain Female	brain
5	chr3:85082600-85090400	Weak transcription	Fetal Brain Male	brain
6	chr3:85082600-85091600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:85083000-85090800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:85083200-85088800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:85083600-85088800	Weak transcription	Brain Angular Gyrus	brain
10	chr3:85083800-85089000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:85083800-85089200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:85086800-85092000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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