Variant report

Variant	rs61509155
Chromosome Location	chr3:164169475-164169476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10513614	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848122	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55724803	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58174786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60848629	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60892081	1.00[AMR][1000 genomes]
rs61447731	1.00[AMR][1000 genomes]
rs6769265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6782244	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788023	1.00[AMR][1000 genomes]
rs6802643	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018822	1.00[AMR][1000 genomes]
rs73024847	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031501	1.00[AMR][1000 genomes]
rs73033213	1.00[AMR][1000 genomes]
rs73033947	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73040776	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877049	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73877058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616947	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7617732	1.00[AMR][1000 genomes]
rs7641679	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009069	chr3:163787128-164323219	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv877840	chr3:163832988-164200220	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010490	chr3:163961100-164399225	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv497973	chr3:163970658-164370204	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1014815	chr3:164007081-164359622	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv877893	chr3:164018044-164202045	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1843213	chr3:164018044-164209573	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1006002	chr3:164021906-164653572	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv998340	chr3:164047951-164325380	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1014686	chr3:164123367-164172830	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1006831	chr3:164123367-164176588	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv997482	chr3:164124061-164176588	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv999285	chr3:164133483-164326560	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv536791	chr3:164133483-164326560	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv3463599	chr3:164167718-164188619	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv3463600	chr3:164167718-164188619	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv11902	chr3:164168079-164188485	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:164168200-164170000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:164168800-164169800	Active TSS	Right Atrium	heart
3	chr3:164168800-164170200	Active TSS	Stomach Smooth Muscle	stomach
4	chr3:164169000-164169600	Active TSS	Adipose Nuclei	Adipose
5	chr3:164169000-164169800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:164169000-164169800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:164169000-164169800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:164169200-164176400	Weak transcription	NHDF-Ad	bronchial
9	chr3:164169400-164170000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:164169400-164170000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:164169400-164170000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:164169400-164170400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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