Variant report

Variant	rs61510962
Chromosome Location	chr4:142051274-142051275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57532703	1.00[AMR][1000 genomes]
rs58050198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58191524	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526770	chr4:142048547-142061946	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:142039400-142051800	Weak transcription	Aorta	Aorta
3	chr4:142041000-142052200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:142043600-142051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:142044600-142051600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:142044800-142051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:142048200-142051800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:142048400-142053000	Weak transcription	Pancreas	Pancrea
9	chr4:142048800-142055600	Active TSS	Right Ventricle	heart
10	chr4:142049000-142052400	Weak transcription	Brain Substantia Nigra	brain
11	chr4:142049400-142051400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:142049400-142051400	Weak transcription	NHDF-Ad	bronchial
13	chr4:142049600-142051800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:142049600-142052200	Weak transcription	Psoas Muscle	Psoas
15	chr4:142049800-142051400	Weak transcription	Adipose Nuclei	Adipose
16	chr4:142050400-142051800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr4:142050400-142054800	Active TSS	Stomach Smooth Muscle	stomach
18	chr4:142050600-142051600	Enhancers	Fetal Muscle Leg	muscle
19	chr4:142050600-142052000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:142050600-142053000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:142050600-142054800	Active TSS	Brain Anterior Caudate	brain
22	chr4:142050600-142054800	Active TSS	Right Atrium	heart
23	chr4:142050600-142055800	Active TSS	Left Ventricle	heart
24	chr4:142050800-142053000	Weak transcription	Spleen	Spleen
25	chr4:142051000-142052400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr4:142051000-142052400	Active TSS	Fetal Brain Female	brain
27	chr4:142051000-142054800	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr4:142051200-142051400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:142051200-142051400	Active TSS	Muscle Satellite Cultured Cells	--
30	chr4:142051200-142051400	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr4:142051200-142051400	Flanking Active TSS	Fetal Heart	heart
32	chr4:142051200-142051400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
33	chr4:142051200-142051400	Flanking Active TSS	Ovary	ovary
34	chr4:142051200-142051400	Active TSS	Osteobl	bone
35	chr4:142051200-142051600	Flanking Active TSS	Fetal Brain Male	brain
36	chr4:142051200-142051800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:142051200-142053000	Active TSS	Fetal Muscle Trunk	muscle
38	chr4:142051200-142053000	Active TSS	Fetal Stomach	stomach
39	chr4:142051200-142053000	Active TSS	Rectal Smooth Muscle	rectum
40	chr4:142051200-142053400	Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr4:142051200-142055400	Active TSS	Brain Inferior Temporal Lobe	brain

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