Variant report

Variant	rs61514894
Chromosome Location	chr13:30917017-30917018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:30916466..30917984-chr13:30920808..30923180,2	K562	blood:
2	chr13:30912562..30914754-chr13:30916773..30919801,3	K562	blood:
3	chr13:30916021..30918034-chr13:30924838..30926822,2	MCF-7	breast:
4	chr13:30916446..30918652-chr13:31030492..31033146,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KATNAL1-3	chr13:30916597-30917023	XLOC_010556
2	lnc-KATNAL1-3	chr13:30916970-30917023	XLOC_010556

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60183638	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443658	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv455853	chr13:30911531-30951514	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv561394	chr13:30911531-30951514	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30909000-30919800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr13:30909800-30919000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:30909800-30919400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:30910000-30919000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:30910000-30920600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:30910800-30919200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:30911000-30917400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr13:30911000-30919000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr13:30911200-30919600	Weak transcription	Primary B cells from cord blood	blood
10	chr13:30911400-30917600	Enhancers	Colon Smooth Muscle	Colon
11	chr13:30911600-30917400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:30912000-30918400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr13:30913800-30918600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr13:30913800-30919200	Weak transcription	Spleen	Spleen
15	chr13:30914000-30917200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr13:30914000-30917200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:30914000-30917200	Enhancers	Liver	Liver
18	chr13:30914200-30917200	Enhancers	Dnd41	blood
19	chr13:30914800-30917800	Weak transcription	Pancreas	Pancrea
20	chr13:30914800-30918400	Weak transcription	Lung	lung
21	chr13:30915400-30920000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:30915400-30920200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:30915400-30920600	Weak transcription	Right Atrium	heart
24	chr13:30915400-30921600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:30915600-30917200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr13:30915600-30917200	Enhancers	Stomach Smooth Muscle	stomach
27	chr13:30915600-30917800	Enhancers	Rectal Smooth Muscle	rectum
28	chr13:30915800-30919200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr13:30916400-30919600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr13:30916600-30920600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr13:30916800-30917200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:30916800-30917200	Enhancers	HMEC	breast
33	chr13:30916800-30917200	Enhancers	NHDF-Ad	bronchial
34	chr13:30916800-30917800	Weak transcription	Stomach Mucosa	stomach
35	chr13:30916800-30919200	Weak transcription	Fetal Thymus	thymus
36	chr13:30916800-30919200	Weak transcription	Thymus	Thymus
37	chr13:30916800-30919600	Weak transcription	Esophagus	oesophagus
38	chr13:30917000-30917200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:30917000-30917200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:30917000-30917200	Enhancers	NHEK	skin
41	chr13:30917000-30917400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:30917000-30917600	Weak transcription	Primary T cells from cord blood	blood
43	chr13:30917000-30926800	Weak transcription	Aorta	Aorta

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