Variant report

Variant	rs61529373
Chromosome Location	chr17:16156941-16156942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1006958	1.00[EUR][1000 genomes]
rs57100283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57283014	0.81[AFR][1000 genomes]
rs57540884	1.00[EUR][1000 genomes]
rs57939654	1.00[EUR][1000 genomes]
rs57958152	1.00[EUR][1000 genomes]
rs58069228	1.00[EUR][1000 genomes]
rs58203269	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58213352	1.00[EUR][1000 genomes]
rs58937503	1.00[EUR][1000 genomes]
rs59191673	1.00[EUR][1000 genomes]
rs59414015	1.00[EUR][1000 genomes]
rs59837344	1.00[EUR][1000 genomes]
rs60277322	1.00[EUR][1000 genomes]
rs60436356	1.00[EUR][1000 genomes]
rs61360753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61479315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212903	1.00[EUR][1000 genomes]
rs7217230	1.00[EUR][1000 genomes]
rs7219038	1.00[EUR][1000 genomes]
rs7225649	1.00[EUR][1000 genomes]
rs73280300	0.82[AFR][1000 genomes]
rs73280301	0.82[AFR][1000 genomes]
rs73281934	1.00[EUR][1000 genomes]
rs73281961	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281967	1.00[EUR][1000 genomes]
rs73281977	1.00[EUR][1000 genomes]
rs73281979	1.00[EUR][1000 genomes]
rs73281980	1.00[EUR][1000 genomes]
rs73281981	1.00[EUR][1000 genomes]
rs73287023	1.00[EUR][1000 genomes]
rs73287032	1.00[EUR][1000 genomes]
rs73287067	1.00[EUR][1000 genomes]
rs73287076	1.00[EUR][1000 genomes]
rs73287082	1.00[EUR][1000 genomes]
rs73287088	1.00[EUR][1000 genomes]
rs73287090	1.00[EUR][1000 genomes]
rs73287414	1.00[EUR][1000 genomes]
rs73287419	1.00[EUR][1000 genomes]
rs73287423	1.00[EUR][1000 genomes]
rs73287425	1.00[EUR][1000 genomes]
rs73287426	1.00[EUR][1000 genomes]
rs73287441	1.00[EUR][1000 genomes]
rs73288903	1.00[EUR][1000 genomes]
rs73288904	1.00[EUR][1000 genomes]
rs8066726	1.00[EUR][1000 genomes]
rs8067000	1.00[EUR][1000 genomes]
rs8068254	1.00[EUR][1000 genomes]
rs8069679	1.00[EUR][1000 genomes]
rs8071289	1.00[EUR][1000 genomes]
rs8075170	1.00[EUR][1000 genomes]
rs8079037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
7	nsv528263	chr17:16097430-16196996	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
8	esv3326983	chr17:16138963-16210147	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16121000-16163200	Weak transcription	Spleen	Spleen
2	chr17:16121200-16157000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:16121200-16158800	Weak transcription	Left Ventricle	heart
4	chr17:16121200-16159800	Weak transcription	Lung	lung
5	chr17:16121200-16163000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr17:16121400-16158600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr17:16121400-16158800	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:16121400-16159000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr17:16121400-16170600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:16121600-16158400	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:16121600-16158600	Weak transcription	Brain Germinal Matrix	brain
12	chr17:16121800-16158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr17:16121800-16158400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr17:16121800-16163200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr17:16121800-16163200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr17:16122000-16163400	Weak transcription	Fetal Brain Female	brain
17	chr17:16124200-16158200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:16126200-16163200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:16126200-16163400	Weak transcription	Primary B cells from cord blood	blood
20	chr17:16126400-16158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr17:16127600-16158600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:16132200-16163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr17:16132400-16163600	Weak transcription	HSMM	muscle
24	chr17:16133800-16163000	Weak transcription	Fetal Thymus	thymus
25	chr17:16133800-16176200	Weak transcription	NHEK	skin
26	chr17:16134000-16170600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr17:16134200-16162400	Weak transcription	Dnd41	blood
28	chr17:16134400-16163200	Weak transcription	Thymus	Thymus
29	chr17:16134800-16163200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr17:16135600-16158600	Weak transcription	Adipose Nuclei	Adipose
31	chr17:16138600-16163400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:16138600-16170200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr17:16139000-16163400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:16139400-16163000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr17:16139600-16163400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr17:16139800-16158200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:16140000-16170200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr17:16141400-16159000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr17:16143800-16158200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr17:16143800-16160600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr17:16144000-16163000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr17:16144200-16158200	Weak transcription	Fetal Stomach	stomach
43	chr17:16147200-16158200	Weak transcription	NHLF	lung
44	chr17:16147400-16158200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr17:16147400-16158200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr17:16147400-16158400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr17:16147400-16158800	Weak transcription	NH-A	brain
48	chr17:16147400-16163200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr17:16147400-16167000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr17:16147600-16158200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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