Variant report

Variant	rs61540531
Chromosome Location	chr3:81917124-81917125
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10433513	0.89[EUR][1000 genomes]
rs10460925	0.87[ASN][1000 genomes]
rs11127743	0.87[ASN][1000 genomes]
rs11127744	0.89[EUR][1000 genomes]
rs11127745	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12233505	0.87[ASN][1000 genomes]
rs12630587	0.86[ASN][1000 genomes]
rs12631503	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1404295	0.90[ASN][1000 genomes]
rs1524556	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17019297	0.86[ASN][1000 genomes]
rs17019364	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17019369	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17019416	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17019418	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17019431	0.89[EUR][1000 genomes]
rs1851924	0.81[ASN][1000 genomes]
rs2316043	0.82[ASN][1000 genomes]
rs3772885	0.81[ASN][1000 genomes]
rs55988714	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56019819	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56028558	0.84[EUR][1000 genomes]
rs56120615	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60428278	0.84[EUR][1000 genomes]
rs61156634	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61617076	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6765293	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6778413	0.85[ASN][1000 genomes]
rs6781421	0.82[AFR][1000 genomes]
rs6784904	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6791857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134760	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73134764	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73134800	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73134802	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73136709	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73138733	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73138765	0.89[EUR][1000 genomes]
rs73138781	0.84[EUR][1000 genomes]
rs73138782	0.89[EUR][1000 genomes]
rs73138783	0.84[EUR][1000 genomes]
rs7611917	0.85[ASN][1000 genomes]
rs7611964	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7612181	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7618777	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7619049	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7635332	0.85[ASN][1000 genomes]
rs7644425	0.84[ASN][1000 genomes]
rs9812141	0.85[ASN][1000 genomes]
rs9812505	0.85[ASN][1000 genomes]
rs9827558	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv441830	chr3:81909338-81923746	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81914000-81927000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:81914800-81921600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:81915800-81919600	Weak transcription	Psoas Muscle	Psoas
4	chr3:81917000-81921000	Enhancers	Liver	Liver

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