Variant report

Variant	rs61545713
Chromosome Location	chr2:31415357-31415358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56404374	0.83[AFR][1000 genomes]
rs57748606	0.83[AFR][1000 genomes]
rs73921537	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921578	0.83[AFR][1000 genomes]
rs73921579	0.83[AFR][1000 genomes]
rs73921580	0.83[AFR][1000 genomes]
rs73921581	0.83[AFR][1000 genomes]
rs73921582	0.83[AFR][1000 genomes]
rs73921583	0.83[AFR][1000 genomes]
rs73921584	0.83[AFR][1000 genomes]
rs73921587	0.83[AFR][1000 genomes]
rs73921589	0.83[AFR][1000 genomes]
rs73921591	0.83[AFR][1000 genomes]
rs73921592	0.83[AFR][1000 genomes]
rs73921593	0.83[AFR][1000 genomes]
rs73921597	0.83[AFR][1000 genomes]
rs73921598	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv873771	chr2:31363732-31416582	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv873772	chr2:31363732-31417863	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv873773	chr2:31363732-31426449	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv873774	chr2:31363732-31432367	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv873775	chr2:31363732-31439443	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv873776	chr2:31384009-31439443	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv997652	chr2:31385242-31431588	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv535611	chr2:31385242-31431588	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31391200-31418600	Weak transcription	Gastric	stomach
2	chr2:31394800-31419600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:31395200-31416600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr2:31404000-31415800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:31410800-31420400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:31411000-31421800	Weak transcription	Primary T cells from cord blood	blood
7	chr2:31411000-31427400	Weak transcription	Fetal Brain Female	brain
8	chr2:31411200-31436800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:31412800-31416800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:31413200-31417400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:31413400-31425600	Weak transcription	Right Ventricle	heart
12	chr2:31413800-31416200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr2:31414600-31415400	Strong transcription	Primary hematopoietic stem cells	blood
14	chr2:31414600-31416400	Weak transcription	Brain Anterior Caudate	brain
15	chr2:31415000-31418200	Strong transcription	Esophagus	oesophagus
16	chr2:31415200-31415400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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