Variant report

Variant	rs61549511
Chromosome Location	chr10:25797178-25797179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1329253	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16926013	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926017	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16926019	0.90[AMR][1000 genomes]
rs57001691	0.83[AFR][1000 genomes]
rs58006889	0.90[AMR][1000 genomes]
rs58481217	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58781151	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74124044	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124049	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25783200-25797200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:25791600-25800400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:25791800-25797200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:25791800-25797200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:25791800-25797200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:25791800-25797200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:25791800-25797200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:25792000-25797400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:25795000-25797200	Weak transcription	K562	blood
11	chr10:25795000-25797400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:25795000-25797400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:25796600-25797800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:25796600-25798000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:25796800-25798000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:25796800-25798400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:25797000-25797800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:25797000-25798000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr10:25797000-25798600	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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