Variant report

Variant	rs61558701
Chromosome Location	chr3:25418298-25418299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1026930	0.86[EUR][1000 genomes]
rs11925814	0.93[EUR][1000 genomes]
rs1483835	0.81[EUR][1000 genomes]
rs17016253	0.81[EUR][1000 genomes]
rs17016257	0.81[EUR][1000 genomes]
rs17016308	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016320	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016328	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016343	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016356	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2086790	0.93[EUR][1000 genomes]
rs56167545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56254711	0.81[AFR][1000 genomes]
rs56397774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57064248	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58213804	1.00[AFR][1000 genomes]
rs59034168	0.97[EUR][1000 genomes]
rs59064731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60112210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60411787	1.00[AFR][1000 genomes]
rs60519915	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60838657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60917922	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61165804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769438	0.81[EUR][1000 genomes]
rs73156056	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73156093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73157810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73157831	0.89[AFR][1000 genomes]
rs73157833	0.89[AFR][1000 genomes]
rs73157837	0.89[AFR][1000 genomes]
rs73820431	1.00[AFR][1000 genomes]
rs73820454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25416000-25420200	Enhancers	Fetal Intestine Large	intestine
2	chr3:25417600-25421200	Enhancers	Fetal Intestine Small	intestine
3	chr3:25418200-25418400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links