Variant report

Variant	rs61570176
Chromosome Location	chr13:87999927-87999928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56091947	1.00[AMR][1000 genomes]
rs57253656	1.00[AMR][1000 genomes]
rs60609846	1.00[AMR][1000 genomes]
rs60812537	1.00[AMR][1000 genomes]
rs73561222	1.00[AMR][1000 genomes]
rs73561224	1.00[AMR][1000 genomes]
rs73561226	1.00[AMR][1000 genomes]
rs73561227	1.00[AMR][1000 genomes]
rs73561234	1.00[AMR][1000 genomes]
rs73562481	1.00[AMR][1000 genomes]
rs73562486	1.00[AMR][1000 genomes]
rs73563755	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563761	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563774	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563779	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563791	0.88[AFR][1000 genomes]
rs74105658	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045687	chr13:87822969-88114685	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv541860	chr13:87822969-88114685	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv930999	chr13:87831662-88143592	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1043448	chr13:87835419-88140970	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916254	chr13:87856806-88107725	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1044185	chr13:87949735-88096644	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv832672	chr13:87994963-88167897	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87993800-88005800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:87996800-88005600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:87999000-88012600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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