Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1078825	1.00[AMR][1000 genomes]
rs1460743	1.00[EUR][1000 genomes]
rs17082932	1.00[EUR][1000 genomes]
rs56287127	1.00[EUR][1000 genomes]
rs57163507	1.00[EUR][1000 genomes]
rs58422066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58841810	1.00[EUR][1000 genomes]
rs6884164	1.00[EUR][1000 genomes]
rs73129341	1.00[AFR][1000 genomes]
rs73129347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129377	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129387	1.00[EUR][1000 genomes]
rs73129390	1.00[EUR][1000 genomes]
rs73131359	1.00[EUR][1000 genomes]
rs7715030	1.00[EUR][1000 genomes]
rs7720992	1.00[EUR][1000 genomes]
rs7729682	1.00[EUR][1000 genomes]
rs9784703	1.00[EUR][1000 genomes]
rs9784712	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv508370	chr5:92539782-92575241	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92541400-92545400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:92543400-92545200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:92543400-92545800	Enhancers	Fetal Lung	lung
4	chr5:92544000-92545800	Enhancers	Ovary	ovary
5	chr5:92544200-92545200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:92544200-92545400	Enhancers	Fetal Kidney	kidney
7	chr5:92544200-92545600	Enhancers	Fetal Stomach	stomach
8	chr5:92544400-92545600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:92544400-92545800	Enhancers	Fetal Muscle Leg	muscle
10	chr5:92544600-92545200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:92544600-92545600	Enhancers	Placenta	Placenta
12	chr5:92544600-92545800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr5:92544800-92545600	Enhancers	Spleen	Spleen

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