Variant report

Variant	rs61578857
Chromosome Location	chr3:23243205-23243206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10510536	0.93[ASN][1000 genomes]
rs11926494	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11927173	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13314285	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1495130	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17012800	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17012829	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1908475	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2017065	0.85[ASN][1000 genomes]
rs4327332	0.87[ASN][1000 genomes]
rs56223303	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57131555	0.88[ASN][1000 genomes]
rs58724157	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60782093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765801	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6769167	0.85[ASN][1000 genomes]
rs6792370	0.91[ASN][1000 genomes]
rs7612463	0.87[ASN][1000 genomes]
rs7627380	0.87[ASN][1000 genomes]
rs9831921	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9866739	0.92[ASN][1000 genomes]
rs9867046	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237800-23243800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:23237800-23244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:23238000-23243800	Weak transcription	Aorta	Aorta
4	chr3:23240800-23243600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:23241000-23243600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:23241000-23243600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:23241200-23243600	Weak transcription	Adipose Nuclei	Adipose
8	chr3:23241400-23243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:23242800-23243600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:23243000-23243600	Enhancers	Brain Anterior Caudate	brain
11	chr3:23243000-23243600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:23243000-23243800	Weak transcription	Left Ventricle	heart
13	chr3:23243200-23243600	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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