Variant report

Variant	rs61578983
Chromosome Location	chr5:98172707-98172708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98171393..98172987-chr5:98182107..98184850,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10044680	1.00[EUR][1000 genomes]
rs10045317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10046011	1.00[EUR][1000 genomes]
rs10060286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13358830	1.00[EUR][1000 genomes]
rs1382336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1421635	1.00[EUR][1000 genomes]
rs161743	1.00[EUR][1000 genomes]
rs162139	1.00[EUR][1000 genomes]
rs162141	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs162142	1.00[EUR][1000 genomes]
rs162143	1.00[EUR][1000 genomes]
rs162157	1.00[EUR][1000 genomes]
rs162160	1.00[EUR][1000 genomes]
rs162162	1.00[EUR][1000 genomes]
rs170579	1.00[EUR][1000 genomes]
rs17166187	1.00[EUR][1000 genomes]
rs17166195	1.00[EUR][1000 genomes]
rs17166198	1.00[EUR][1000 genomes]
rs17166210	1.00[EUR][1000 genomes]
rs17166218	1.00[EUR][1000 genomes]
rs17166224	1.00[EUR][1000 genomes]
rs17166397	1.00[EUR][1000 genomes]
rs17166450	1.00[EUR][1000 genomes]
rs17166454	1.00[EUR][1000 genomes]
rs179175	1.00[EUR][1000 genomes]
rs1828171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28782775	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325198	1.00[EUR][1000 genomes]
rs325216	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs327801	1.00[EUR][1000 genomes]
rs327802	1.00[EUR][1000 genomes]
rs327805	1.00[EUR][1000 genomes]
rs451883	1.00[EUR][1000 genomes]
rs57969582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59156696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870416	1.00[EUR][1000 genomes]
rs6875233	1.00[EUR][1000 genomes]
rs6891520	1.00[EUR][1000 genomes]
rs73151499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73153532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73155421	1.00[EUR][1000 genomes]
rs73155423	1.00[EUR][1000 genomes]
rs7727696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98161000-98175400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:98164000-98175200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:98169200-98175000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:98170400-98176600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:98171800-98173000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:98172000-98175000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:98172200-98179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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