Variant report

Variant	rs61579481
Chromosome Location	chr13:87805989-87805990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11618967	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16951130	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16951137	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55756093	1.00[ASN][1000 genomes]
rs56198489	1.00[ASN][1000 genomes]
rs56204352	1.00[ASN][1000 genomes]
rs56402506	1.00[ASN][1000 genomes]
rs56723125	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57386857	1.00[ASN][1000 genomes]
rs58594104	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58658894	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58716013	1.00[ASN][1000 genomes]
rs59760565	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60032361	1.00[ASN][1000 genomes]
rs60048216	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60680591	1.00[ASN][1000 genomes]
rs60842880	1.00[ASN][1000 genomes]
rs61192808	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73560623	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73562438	1.00[ASN][1000 genomes]
rs73562440	1.00[ASN][1000 genomes]
rs73562442	1.00[ASN][1000 genomes]
rs73565478	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73566067	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73567603	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74103203	1.00[ASN][1000 genomes]
rs74103209	1.00[ASN][1000 genomes]
rs74103210	1.00[ASN][1000 genomes]
rs74103212	1.00[ASN][1000 genomes]
rs74103272	1.00[ASN][1000 genomes]
rs74103275	1.00[ASN][1000 genomes]
rs74103296	1.00[ASN][1000 genomes]
rs74103302	1.00[ASN][1000 genomes]
rs74105610	1.00[ASN][1000 genomes]
rs74105957	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74105959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524749	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87803400-87806000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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