Variant report

Variant	rs61581529
Chromosome Location	chr8:10817191-10817192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10087923	0.82[ASN][1000 genomes]
rs10088408	0.81[ASN][1000 genomes]
rs34959618	0.89[ASN][1000 genomes]
rs35027032	0.94[ASN][1000 genomes]
rs55982337	0.87[ASN][1000 genomes]
rs7013277	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61581529	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10807400-10818200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:10810400-10818200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10815000-10817600	Weak transcription	Fetal Brain Male	brain
4	chr8:10815000-10820800	Enhancers	Fetal Muscle Leg	muscle
5	chr8:10815200-10818200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:10815400-10818600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:10816000-10818400	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:10816800-10817800	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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