Variant report

Variant	rs61586576
Chromosome Location	chr4:87881378-87881379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:87875765..87890159-chr4:87922878..87933002,25	K562	blood:
2	chr4:87854986..87857497-chr4:87880594..87884426,5	MCF-7	breast:
3	chr4:87880122..87883120-chr4:87994863..87997796,2	K562	blood:
4	chr4:87881202..87884789-chr4:87884979..87890767,11	K562	blood:
5	chr4:87881072..87882876-chr4:87886883..87888744,2	MCF-7	breast:
6	chr4:87852704..87859599-chr4:87881193..87886124,9	K562	blood:
7	chr4:87880314..87885431-chr4:87925237..87930359,11	K562	blood:

Variant related genes	Relation type
ENSG00000163633	Chromatin interaction
ENSG00000172493	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12506662	0.90[ASN][1000 genomes]
rs17012186	0.95[ASN][1000 genomes]
rs1992876	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28522052	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869632	0.96[ASN][1000 genomes]
rs2904151	0.96[ASN][1000 genomes]
rs67773101	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836128	0.88[ASN][1000 genomes]
rs725030	0.99[ASN][1000 genomes]
rs7671931	0.90[ASN][1000 genomes]
rs7693780	0.93[ASN][1000 genomes]
rs7693889	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9996533	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87857600-87882000	Weak transcription	Spleen	Spleen
2	chr4:87868400-87881400	Weak transcription	Colonic Mucosa	Colon
3	chr4:87868400-87891800	Weak transcription	Esophagus	oesophagus
4	chr4:87868600-87886800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:87868600-87898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:87869400-87881800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:87869600-87882000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:87869600-87886200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:87869800-87888000	Weak transcription	HUVEC	blood vessel
10	chr4:87869800-87894000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:87871600-87881800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:87872000-87881800	Weak transcription	Ovary	ovary
13	chr4:87872400-87882000	Weak transcription	Primary T cells from cord blood	blood
14	chr4:87872600-87882800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:87872600-87926200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:87872800-87891400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:87875200-87882400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:87875600-87882000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:87876600-87886400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr4:87877000-87881800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:87877400-87886200	Weak transcription	Hela-S3	cervix
22	chr4:87877600-87881400	Weak transcription	A549	lung
23	chr4:87877600-87882800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr4:87878000-87883400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr4:87878400-87881800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr4:87878600-87881400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:87878600-87881400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:87878600-87881600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:87878800-87881400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:87878800-87891600	Weak transcription	NHEK	skin
31	chr4:87879000-87881400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:87879000-87884800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:87879200-87881400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:87879200-87881400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:87879200-87881400	Enhancers	Dnd41	blood
36	chr4:87879200-87882200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr4:87879600-87882200	Enhancers	Fetal Thymus	thymus
38	chr4:87879600-87883200	Enhancers	Stomach Mucosa	stomach
39	chr4:87879600-87885400	Enhancers	Primary B cells from peripheral blood	blood
40	chr4:87879800-87881800	Enhancers	Primary hematopoietic stem cells	blood
41	chr4:87880000-87881400	Enhancers	K562	blood
42	chr4:87880000-87881600	Enhancers	Fetal Heart	heart
43	chr4:87880000-87882600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:87880000-87882600	Enhancers	Primary B cells from cord blood	blood
45	chr4:87880000-87882600	Enhancers	HepG2	liver
46	chr4:87880000-87882800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:87880000-87882800	Enhancers	Small Intestine	intestine
48	chr4:87880000-87883200	Enhancers	Adipose Nuclei	Adipose
49	chr4:87880000-87883200	Enhancers	Liver	Liver
50	chr4:87880000-87883400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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